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Tutorials
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Examples data
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Some processed files have been uploaded to Zenodo (DOI: https://doi.org/10.5281/zenodo.16959682) for direct use.
Others can be obtained via the download links provided in this tutorial.

Major tutorials
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.. toctree::
    :maxdepth: 2

    1_Within-sample

.. toctree::
    :maxdepth: 2

    2_Cross-samples

.. toctree::
    :maxdepth: 2

    3_Cross-species_calc_ISM

.. toctree::
    :maxdepth: 2

    4_pred-newCondition_calc_TFactivity