xchrom.pp.process_test_dual

xchrom.pp.process_test_dual(ad_atac: str | Path | AnnData, input_fasta: str | Path, output_path: str | Path = './test_data/')[source]

Generate XChrom train set and test set from 2 datasets, to generate XChrom test inputs.

Parameters:

  • ad_atac (str or Path or anndata.AnnData) – scATAC anndata file path, need to be processed by scanpy’s filter_genes and filter_cells functions, get .obs[‘n_genes’]

  • input_fasta (str or Path) – genome fasta file path

  • output_path (str or Path, optional) – output path, default is ‘./test_data/’

Returns:

ad

Return type:

The original atac anndata object