Index

_

__init__() (xchrom.tr.Generator method)

B

bed_to_fasta() (in module xchrom.tl)

C

calc_auc_pr() (in module xchrom.tl) calc_ism() (in module xchrom.tl) calc_ism_from_bed() (in module xchrom.tl) calc_nsls_score() (in module xchrom.tl) calc_pca() (in module xchrom.tl) calc_tf_activity() (in module xchrom.tl)

crossboth_aucprc() (in module xchrom.tl) crosscell_aucprc() (in module xchrom.tl) crosscell_nsls() (in module xchrom.tl) crosspeak_aucprc() (in module xchrom.tl) crosssamples_aucprc() (in module xchrom.tl) crosssamples_nsls() (in module xchrom.tl)

D

denoise_nsls() (in module xchrom.tl)

F

filter_multiome_data() (in module xchrom.pp)

G

generate_tf_activity_data() (in module xchrom.tl)

Generator (class in xchrom.tr)

I

ism_norm() (in module xchrom.tl)

N

n_cells (xchrom.tr.Generator attribute)

n_peaks (xchrom.tr.Generator attribute)

P

plot_logo() (in module xchrom.pl) plot_motif_activity() (in module xchrom.pl) plot_percell_aucprc() (in module xchrom.pl)

plot_perpeak_aucprc() (in module xchrom.pl) plot_train_history() (in module xchrom.pl) process_test_dual() (in module xchrom.pp) process_train_test_single() (in module xchrom.pp)

R

read_10x_h5_to_h5ad() (in module xchrom.readfile)

T

train_XChrom() (in module xchrom.tr)

X

XChrom_model() (in module xchrom.tr)